[an error occurred while processing this directive] BDGP: 2nd Chromosome: Source Hoskins et al.

Projects

2nd Chromosome: Source Hoskins et al.


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STS Cytological
location
Flanking
sequence
Nucleotide
position
Oregon R Canton S w;iso2;iso3 P strain 1
Q1028
P strain 2 Release 1
y;cnbwsp
RFLP?
Dm0447 21D1-21D2 TCTCT - ACGGC 449 C(37) C(40) C(42) T(17) C
TCTCT - GACCT C(32)TT(32) CTT
Dm0375 21E3-21F3 TACGG - AGTGT 32 A(29) A(27) G(30) A(27) A BscGI
GTCGC - CTGGT 103 C(32) C(33) A(21) C(37) C
Q 1037 22D1-D2 Q1037 Q1040
Dm2641 23A1-23A3 ACTTG - CCCAG 32 A(40) A(51) G(56) A(47) A(42) G SimI HaeIII
TCCAT - AAGAA 107 G(56) G(56) A(48) A(48) A(46) G NlaIII
GGCCA - CGGCT 174 G(35) A(40) G(37) G(37) G(35) A AciI
Dm0611 23E1-23E4 ACAAA - CTTTA A(56)AC(42) T(45)AG(40) T(51)AG(45) T(45)AG(45) T(51)AG(51) TAG AluI
ATCTT -TATAG 153 C(48) C(46) T(56) C(46) C(46) C
ACTCG - TGTGT 169 C(51) C(51) C(27) G(56) G(56) C
GCCAC - CAGTT 186 T(45)G(45) C(45)C(45) T(34)G(34) T(40)G(45) T(51)G(51) CC CviRI PstI
Dm2235 25A3 TATTA - AAATC 141 G(48) A(42) A(37) A MseI
CATAT - GATAT 156-163 DEL(98) DEL(98) DEL(98) TATAATAT (42) TATAATAT (42) TATAATAT NdeI
GTAAT - ATTGT 174 A(40) T(35) T(56) A(40) A(42) A
ATTGG - TTG 233 T(56) T(56) T(56) C(44) C(56) T
TTG - AGTAA 237-238 G(56)A(56) G(56)A(56) G(56)A(56) T(42)T(40) T(42)T(40) GA
Dm2207 26D1-26D2 TCCGT - TCCAG 28 G(51) G(51) G(40) A(45) A(45) G BspGI
TCTTC - GT 118 G(56) T(56) T(42) G(44) G(43) G
GT - TAGTT 121 G(51) A(56) A(37) G(35) G(40) G
CGTCC - AGACG 148 T(51) C(51) C(40) C(46) C(46) T BfaI
AGGTA - TCGTT 163 G(40) G(45) G(40) C(40) C(45) G RsaI
Dm3015 29A2 AACTG - CTTTT 23 T(40) C(56) T(34) T(35) C(42) C
TGTTT - AAAGT 114 A(56) G(56) A(44) A(56) G(56) G DraI MseI
AACAC - CGGTT 147 T(39) A(56) T(35) T(39) A(38) A
CAACC - GGTGC 171 T(31) A(32) A/T(14) A(56) A(42) A
Dm0274 29A5-29B4 GGTAC -CGGTA 741 G(29) G(35) G(38) T(42) G(37) AciI ThaI
TTAAT - CAATT 805 G(40) G(42) G(51) A(44) G(42) CviRI
GCCGA - AGGTG 832 C(40) C(40) C(42) T(46) C(56) T
Q 1040 29C1-C2 Q1040 Q1042
Dm0434 30A3-30A6 TTTTT - AACAT 73-75 A(35)A(35)A(35) T(35)A(35)A(34) A(21)A(27)A(27) T(21)T(27)T(29) T(4)T(4)T(4) TAA
TAGGC - AAAAA 113-114 A(56)A(56) A(47)C(47) A(13)A(13) DEL(98) DEL(98) AC
Dm0652 31F3-32A1 AGCAA - CGAAA 742-743 C(9)A(9) C(37)C(37) C(24)A(24) T(46)T(33) C(24)A(25) CA BsbI
AGTTT - AACGA 821 A(51) A(51) A(42) G(42) A(26) A DraI MseI PmeI
TTATG - AATGC 900 G(51) G(56) G(44) C(37) G(42) G CviRI
TACAA - TTGTC 929 C(46) T(56) T(48) T(13) T(44) T Tsp509I
Dm4048 32A1-32A2 CATAC - TTAGA 113 T(56) A(56) A(42) A(35) T(42) A
GGTTG - CGATA 168 C(46) G(42) G(37) G(35) C(35) G
Dm3374 33A1-33A2 GATAT - GCAGT 733 T(51) G(40) G(44) G(42) T(44) G CviRI
TCCCA - CGGAT 758-759 A(42)A(42) G(42)T(43) G(42)T(42) G(26)T(35) A(24)A(46) GT
TAAAA - GAAAT 769 T(42) C(51) C(56) C(42) T(44) C
GCATT - ACACA 802 G(40) A(51) A(56) A(33) G(33) A MseI
CACAG - GAA 809 C(37) T(43) T(44) T(42) C(33) T
GAA - GTACG 813 T(42) A(40) A(42) A(51) T(42) A
Dm2112 33A1-33A2 TAAAA - TTATG 67 T(35) G(32) T(56) T(56) G(45) T Tsp509I
AACAT - AATCG 104 A(42) T(45) A(56) A(56) A(42) A
GAGAA - AGCGG 125 A(56) G(51) A(42) A(46) G(42) A BsrBI
Dm0240 33A3-33A8 ATGTG - GTGCA 514 C(24) C(24) T(56) C(37) C(47) T
CATAT - TTTGG 546 DEL(27) DEL(52) DEL(48) GTAT(44) DEL(33) DEL NdeI
Dm2479 33D4 ATAGT - GGCAA 75 A(17) A(40) A(40) A(45) T(40)
TTTTC - CATTG 110 G(37) G(56) G(44) G(56) T(44) G
Dm3635 34C1-34C2 CCGCA - AATCG 1494 C(27) C T(40) C(44) C(42) T
GCTTG - ATAAA 1552 A(27) G A(42) A(56) G(42) A
AAAAT - TAAGA 1560 G(33) T G(56) G(44) T(29) G MseI Tsp509I
Dm0393 34D1-34D6 TAACA - TAATT 50 A(42) A(42) T(37) A(33) A(37) A MseI VspI
ACTGC - GTGAG 191-192 T(46)C(33) A(42)A(42) A(48)A(56) A(29)A(29) T(38)C(38) TC BssSI CviRI
Dm0012 35A1-35A2 AATTT - TAAAG 74 T(42) G(23) T(42) G(51) T(44) T DraI MseI
Q 1042 35E1-E2 Q1042 Q1805
Dm0043 35F1-35F2 GATGG - CAGTC 60 A(30) A A(35) A(40) T(37) A
Dm2451 36B3-36C1 TCCTT - AGACA 108 G(40) A(45) G(44) A(56) A(32) G AflII MseI
AGAAT - AA 125 T(51) C(45) T(40) C(56) C(56) T
AA - AGT A(40)AT(40) T(45)AA(51) A(45)AT(56) T(56)AA(51) T(56)AA(40) AAT
AGT - AAT 134 T(40) C(56) T(45) C(51) C(38) T
AAT - CCCAA A(45)T(45)TA(45)TA(51)TT(56) A(45)T(45)TA(51)TA(40)TT(40) A(56)T(56)TA(46)TA(38)TT(40)
TCAAA - GTGAA 157 C(42) T(56) C(51) T(56) T(56) C TaiI
GTGAA - GTACT 163-164 A(56)T(42) A(56)T(56) AT ScaI
Dm0353 39A3-39A7 CTGCT - CAGCT 26 G(51) A(42) G(40) A(42) A(42) G CviRI PstI
TTCCG - GTATC 41 A(51) C(40) C(42) C(42) C(37) C AciI ThaI
CTCGA - ACAGC 60 C(47) T(34) C(40) C(42) C/T(21) C
CTGTG - TTTTC 85 G(40) A(40) A(51) A(51) A(56) A
TGGGA - AAATC 212 A(56) A(56) A(56) T(42) A(47) A
Dm0627 40A6-40B2 GCAAT - TCTGA 304 A(51) T(42) T(25) T(51) T(40) T Tsp509I
Dm0975 41C1-41C6 GCGTG - CGTGC 140-143 CGTG(51)
Dm3495 42A1-42A2 CGGGG - CTTGT 83 G(56) T(37) G(35) G(51) G/T(17) T SimI
CGAGA - GTCAG 132 T(42) C(35) T(20) C(16) C(19) C AatII TaiI
Dm2609 42A8-42A16 TTTTT - AAATT 77-78 T(40)A(40) T(56)A(56) T(56)T(56) T(56)A(23)
Dm2106 42B4-42C2 ACCGA - GCTAC 114 A(56) G(45) G(39) G(25) A(22) A AluI
AGTTT - TAAGC 140 C(51) C(51) T(56) C(56) C(56) C MseI
AGCAG - AGTCC 148 G(56) G(56) A(34) G(34) G(32) G
TGCGA - GGAGA 160 C(46) C(46) T(35) C(34) C(35) C BccI
GCTTT - ACAGG 176 C(42) C(51) T(39) C(40) C(40) C
Q 1805 43E9 Q1805 Q1049
Dm0735 43E12-43F2 CCAAG - TGCGC 74 C(40) T(35) C(40) T(34) T(34) T AluI
ATCTA - GACAT 97 C(42) T(42) C(400 C(45) C(36) T Pfl1108I
Dm0746 44B1 GTATC - GTTCT 140-145 GCACGG(45) GCACGG(33) GCACGG(40) GCACGG(51) GCACGG BscGI
Dm2209 44D1-44D2 CAATA - AAGTA 128 A(45) G(51) A(26) G/A(10) G(29) G
TATCA - AACAT 155 A(46) G(40) A(35) G/A(16) G(32) G
Dm0722 44D5-44E2 CACCG - TTACT G(27)TTT(20) G(32)TTC(14) G/*(11)TTC/T(11) MspI PinAI
Dm3845 46B1-46B2 TTTTT - AATAC 159 A(33) C(51) A(51) C(35) C DraI MseI
Dm0340 47D6-47E2 GCGAA - TTTTA 205 T(28) A(32) T(37) T(40) T(40) T
Dm0084 48C5-48D2 CTCAT - CAGCT 762 T(56) T(51) T(56) C(35) T(49) T
TTATT - GAGAG 772 C(51) C(56) A(44) C(42) C(47) C TaqI
TAAGT - ATTTC 808 A(51) G(51) G(40) G(40) G(40) A Tsp509I
TGAGA - GCCGA 866 C(51) C(51) C(40) C(42) T(40) C
Q 1049 49D1-D3 Q1049 Q1047
Dm2480 50A3-50A4 CCTAA - GACGT 1032 A(51) DEL(98) DEL(53) A(35) A(33) A
TATCC - ACAAC 1060 C(37) T(37) T(51) C(44) C(42) C
Dm0064 50C23-50D1 TTTAC - TTTCT 119 A(37) T(31) A(40) A(31) A(37) A
GCTAA - TTACT 140 G(33) A(29) G(40) A(40) A(40) G Tsp509I
TATTA - TACAT 154 T(40) A(30) T(43) A(35) A(42) T MseI VspI
TTTTT - AAAAA 164 G(9)T(13) A(36)A(36) G(35)T(50) G(27)A(44) G(42)A(44) GT DraI MseI
Dm3709 51E10-51E11 AGAAT - GAATC C(35)AG(35)AATAA(42) C(31)AG(29)AATAA(35) C(35)AG(35)AATAA(37) CAGAATAA
Dm0788 51E5-51E8 AAAAA - CAACA 1012 C(40) T(51) T(33) C(26) C(42) C
Dm2663 51E5-51E8 TCATT - TTTTT 156 A(42) G(22) G(36) A(42) A(42) A
Dm0754 52B1-52B2 AATCA - ATATA 916 C(33) T(51) T(37) T(44) T(46) C
Dm2192 54A2-54B1 AAATG - TGGTT 608 T(56) G(56) T(42) G(37) G(51) T
ATTTC - GGAAT 639 G(51) C(42) G(32) G(48) G(51) G BspEI MspI
Dm2427 54C3-54C11 TCGCT - CCTAC 185 T(42) A(46) T(36) T(45) T(40) T
Dm3490 54E8-54F2 AGTGT - TTTTT 169 T(44) T(56) T(56) T(46) A
Dm0851 55A2-55B1 GAGTT - CGAGT 737 G(43) A(33) A(35) A(40) A(17) A
Dm1720 55A2-55B1 ACTGG - GAAAA 251 G(56) A(48) G(35) G(27) G(14) G
TAAGT - TGCCA 271 C(40) C(45) C(21) G(35) G(38) C
Dm2631 55A2-55B1 TTTTA - TTGCG 161 T(46) T(51) T(20) G(56) G/T(11) T
TGCCA - CATCG 179 T(40) C(37) T(34) T(34) T/C(28) T
Q 1047 57A3 Q1047
Dm0602 56B1-56B2 ATCCC - CCGGT 80 T(43) G(56) T(23) T(44) T AciI
GGATT - CTC 95 A(37) G(47) A(35) A(33) A
CTC - TTCT 99 T(33) C(44) T(42) T(33) T
TTCT - GGCAG 104 T(56) G(48) T(42) T(35) T
GGTGT - TTCCG 152 A(56) G(56) A(50) A(40) A
CTGGG - CACCT 178 C(40) A(56) C(42) C(40) C HaeIII
AGTTC - GTTTG 221 T(56) C(42) T(37) T(17) T
Dm0800 56B1-56B2 AAAA - TAAAA 1298 T(42) T(40) A(51) T(45) A
TTTAT - AAGTG 1319 T(31) A(42) T(45) T(33) T MseI
CTAGG - AATAT A(29)TAC(25) A(43)TAC(17) T(40)TAA(51) A(12)TAC(24) TTAA MseI
AATAT - ATATA 1345 G(32) C(32) G(51) G(29) G
ATAGT - GCAAC 1364 A(10) A(29) G(45) A(15) G
Dm0824 57A4-57A6 GAGCT - GGCGC 64 G(42) T(42) G(44) T(42) T
TATAT - CAGCT A(51)TT(42) A(51)TT(51)
Dm0063 57E2-57E8 TTAGC - TAAAC G(35) G(45) G(34) G
Dm2274 58A4 CCCCC - TTTTC 129-138 TATTTTCCCG(51) GA********(42) AATTTTCTCG(56) GA********(30) T BscGI
Dm1544 58B10-58C4 GGTGA - GGTAT 99 C/T(19) C(51) C(42) C/T(13) C BccI
GTGGT - AACGA 144 A(33) A(56) G(56) G/A(17) A
Dm1639 58F2-58F7 TTCCA - CGGAT A(40)ATC(39) G(35)ATT(56) A(35)ATC(37) A(40)ATC(40) AATC BspEI MspI
ATGAT - GGTTT 175 C(40) G(56) C(56) C(30) C DpnI Sau3AI BccI
Dm2101 59A1-59A3 AGTAA - TAGAA 690 T(11) T(45) G(42) A(37) T Tsp509I
ACTTC - TTACT 811 A(40) G(51) T(42) G(42)
CAGCC - CTGGA 858 G(22) T(37) G(40) T(32) G AciI
Dm2487 59F2 TATCT - ATACT 49 A(40) G(45) A(40) A(33) A
ATTCC - AACAA 71 A(46) A(45) G(51) A(30) G
AGGCA - GCGAT 107 T(51) C(39) T(42) T(42) T NlaIII SphI ThaI
CAGAC - CCGCA 173 A(40) G(35) G(40) G(35) G
CAGCA - ACGGA 182 G(33) C(43) C(56) C(42) C
Dm0327 60B2-60B10 TATGTGTG - TGTGTGCT 100-101 T(39)A(39) DEL(98) DEL(98) DEL(98) TA
Dm2247 60D10-60D11 TTCGG - GGGCG 158 C(42) T(56) T(44) T(42) C AciI