Berkeley Drosophila Genome Project
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3rd Chromosome: Source Hoskins et al.
Click [HERE] to view Table Legend
| STS | Cytological location |
Flanking sequence |
Nucleotide position |
Oregon R | Canton S | w;iso2;iso3 | P strain 1 Q1028 |
P strain 2 | Release 1 y;cnbwsp |
RFLP? |
|---|---|---|---|---|---|---|---|---|---|---|
| Dm2467 | 61C1-61C2 | ATCTT - ACTGG | 219 | T(45) | T(46) | T(29) | A(22) | A | MseI | |
| CTGTC - TTTTT | 235 | T(48) | T(27) | T(30) | ||||||
| Dm0688 | 61D1-61D2 | AATTT - GGAGA | 203 | A(51) | C(56) | A | C | A | ||
| AGAAT - TGGAA | 252 | G(51) | C(56) | G | C | G | ||||
| Q1050 | 62B4-62B5 | Q1050 | Q1052 | |||||||
| Dm3835 | 62F1-62F2 | CAACA - GCTAA | 202 | G(40) | G(42) | G(42) | A(44) | A(42) | G | |
| Dm2200 | 63D3 | GCCGC - TTCCC | 151 | C(45) | T(45) | C(29) | T(30) | T(42) | C | |
| TTCCC - CCCTC | 157 | A(45) | G(51) | A(44) | G(42) | G(37) | G | AciI | ||
| Dm2086 | 65A6-65A10 | TACGA - AAGCT | 35 | T(33) | C(37) | C(47) | T(38) | T | T | |
| TATTT - AAA | 85-86 | C(40)A(40) | C(15)A/C(11) | CA | CA | |||||
| AAA - TTTAA | 90-94 | TTT(51)AA(45) | TTT(24)AA(28) | TTTAA | TTTAA | |||||
| TTAAT - TTATA | 101-110 | ATATATTTAA(48) | ATATATTTAA(33) | ATATATTTAA | ATATATTTAA | |||||
| TTATA - GTATT | 116-128 | TATATAATATATA(56) | TATATAATATATA(28) | TATATAATATATA | TATATAATATATA | |||||
| ATTAA - GTATA | 136 | T(42) | C(40) | C(42) | T(42) | T | T | VspI TaiI | ||
| Dm0929 | 67A1-67A2 | TAATG - GTTT | 508 | T(56) | C(56) | C(42) | C(18) | C(42) | C | |
| GTTT - GTGGT | 513 | A(40) | T(42) | A(40) | T(24) | T(44) | T | |||
| Dm2202 | 67C10-67D1 | CATTT - CCGAA | 880 | G(42) | A(40) | G(40) | A(37) | A(35) | G | |
| Q1052 | 68A1-68A2 | Q1052 | Q1060 | |||||||
| Dm2215 | 68B1-68B2 | ATTCA - CTAAT | G(40)TTC(38) | G(42)TTC(38) | T(56)TTT(40) | G(35)TTC(28) | G(42)TTC(40) | GTTC | ||
| TTCCC - TATCC | 607 | T(42) | T(37) | A(42) | T(42) | T(46) | T | |||
| TTCAC - AATA | 619 | A(45) | A(37) | G(30) | A(42) | A(42) | A | |||
| ATAA - AAC | 624 | G(47) | G(42) | A(44) | G(42) | G(44) | G | |||
| AAC - TTCAC | 628 | A(47) | A(44) | T(47) | A(42) | A(42) | A | |||
| TCAAC - ATTTT | 641 | T(45) | T(40) | C(42) | T(38) | T(40) | T | |||
| GTTTT - GTGGG | 753 | T(45) | T(40) | C(42) | T(42) | T(42) | T | |||
| Dm2544 | 69D1 | TACTT - CGCTG | 642 | G(27) | G(40) | G(40) | A(51) | A(40) | G | HhaI |
| Dm3239 | 71F1-71F2 | AGAGC - GAACT | 73 | C(40) | C(37) | T(35) | T(35) | C(40) | T | AluI |
| GTGTG - GAGAT | 88 | G(46) | G(51) | A(30) | A(42) | G(40) | G | |||
| AATTC - TCCTA | 114-132 | AATTTTTAATGTTTCTAGG(33) | AATTTTTAATGTTTCTAGG(37) | AATTTTTAATGTTTCTAGG | BfaI MseI Tsp509I | |||||
| Dm1809 | 72C1-72D6 | AGGCG - AGGAT | 714 | C(40) | C(39) | A(19) | A | C | C | HhaI |
| Q1060 | 73A1-A4 | Q1060 | Q1056 | |||||||
| Dm3626 | 74F4-75A2 | AGTGG - AAAGC | 1267 | A(30) | A(56) | G(56) | A(33) | A(56) | A | |
| ATGGG - GGTGG | 1301 | A(22) | T(51) | T(56) | A(42) | T(47) | T | |||
| Dm2220 | 76B6-76B10 | GCAAT - CCGAT | 124 | T(16) | T(29) | G(33) | T(22) | T(42) | G | Tsp509I |
| Dm3089 | 76C3 | CGATG - TTTAT | 51 | T(51) | T | |||||
| AATAT - TA | A(51)TG(51) | A(45)TG(45) | G(44)TA(44) | A(40)TG(45) | A(56)TG(56) | GTA | ||||
| TA - TATAT | 161-167 | TATGTAG(45) | TATGTAG(45) | CTACGTA(56) | TATGTAG(42) | TATGTAG(37) | CTACGTA | |||
| Q1056 | 83A7-A8 | Q1056 | Q1058 | |||||||
| Dm1568 | 86A5 | TTGCA - CAAGA | 155 | A(51) | A(38) | C(27) | A(33) | A(30) | A | |
| AACTC - TCCAC | 165 | C(56) | A(40) | C(31) | A(35) | C(42) | A | |||
| Dm3326 | 87F13-88A1 | CTGGA - GAAAT | 71-91 | CATGAACTTATTCAGCAAC(37) | CATGAACTTATTCAGCAAC(31) | CATGAACTTATTCAGCAAC(31) | BspGI | |||
| AAATA - CCCTA | 96-102 | GGAAATAA(42) | GGAAATAA(37) | GGAAATAA(37) | ||||||
| CTATT - CTAAT | 139-144 | A(40)ACTTC(34) | G(35)ACTTT(35) | A(37)ACTTC(37) | G(37)ACTTT(42) | G(42)ACTTT(44) | AACTTC | MseI | ||
| Dm3478 | 88A1 | TCCGT - CAGCA | 90 | G(37) | G(35) | A(37) | G(37) | G(40) | A | CviRI RsaI |
| Dm0337 | 89C2-89C5 | TCCTG - TATAT | 856 | C(51) | G(56) | G(31) | C(40) | C(42) | G | |
| Dm2709 | 89D2-89D4 | CAGGG - GATGA | 668 | A(15) | G(56) | A(42) | A(48) | A(44) | A | |
| GAGCT - TCCAT | C(27)CTG(46)TAT(39) | G(30)CTC(33)TAC(42) | A(42)CTG(38)TAT(38) | C(56)CTG(42)TAT(56) | C(42)CTG(46)TAT(42) | ACTGTAT | SacI | |||
| ATGAT - CCGCG | 692 | A(37) | T(56) | A(34) | A(42) | A(35) | A | |||
| CCGCG - CCCAT | 698 | A(37) | G(35) | A(30) | A(37) | A(31) | A | HaeIII SacII SimI | ||
| GCCGA - GAATG | 710-711 | G(42)C(42) | A(35)A(37) | G(38)C(38) | G(46)G(46) | G(42)C(42) | GC | |||
| GAATG - AGCGA | A(34)GAA(56)A(56)G(56) | C(27)GAC(35)T(27)C(27) | A(42)GAA(46)A(42)G(44) | A(42)GAA(56)A(56)G(51) | A(42)GAA(56)A(56)G(46) | A | ||||
| AGCGA - CAGAG | G(32)GAG(44)CAC(45)GTG(45)TGT(45) | A(48)GAA(37)CAG(36)GTT(40)TGC(33) | G(46)GAG(37)CAC(42)GTG(44)TGT(42) | G(51)GAG(46)CAC(44)GTG(40)TGT(51) | G(56)GAG(48)CAC(37)GTG(45)TGT(56) | GGAGCACGTGTGT | PmlI TaiI | |||
| Dm2494 | 89F4-90A2 | GGATG - CATCC | 503 | C(38) | C(20) | C(56) | T(44) | C(42) | C | BccI |
| TCGGG - TACTA | 623 | C(37) | A(51) | C(39) | A(40) | C(35) | C | |||
| GATTT - CAACT | 659 | G(45) | G(45) | G(42) | C(29) | G(35) | G | CviRI | ||
| ATGCT - AGCTA | 678 | T(40) | A(51) | T(38) | A(30) | T(42) | T | |||
| Dm3952 | 90D1-90E2 | AATTC - TTTTT | 717 | T(27) | T(30) | T(44) | ||||
| Q1059 | 91A1-A2 | Q1058 | Q1059 | |||||||
| Dm3293 | 92D1-91D2 | TTGTG - GACCC | 94 | T(40) | C(40) | C(35) | C(42) | T(42) | C | |
| CTGAG - ACTGA | 112 | G(56) | C(42) | C(38) | C(42) | G(35) | C | |||
| GGAAT - AGAAT | 183 | T(40) | C(45) | C(35) | C(35) | T(33) | C | Tsp509I | ||
| Dm1705 | 92D1-92D2 | GATAT - CCAAT | 473 | C(51) | C(42) | T(42) | T(42) | C(28) | C | EcoRV |
| TCATA - AAG | 518 | C(33) | C(28) | A(42) | A(33) | C(28) | C | |||
| AAG - CGGAT | 522 | C(42) | C(56) | A(37) | A(44) | C(42) | C | |||
| TGCGG - AGATC | 617 | T(45) | G(51) | G(26) | G(17) | G(32) | G | |||
| Dm2772 | 94C1-94C5 | CATTT - GGCGG | 409 | C(45) | C(40) | T(40) | T(42) | C(42) | C | |
| Dm1690 | 94E6-94E12 | AGTTT - GGATT | 802 | G(56) | G(56) | T(56) | G(33) | G(9) | G | |
| TAAAT - TGGAA | 872 | T(44) | T(45) | T(42) | G(36) | G(9) | T | Tsp509I | ||
| AACAT - TCTGA | 902-903 | A(44)T(48) | A(51)T(51) | A(40)T(45) | T(42)A(42) | T(9)A(9) | TA | |||
| TCTTT - GCCTG | 916 | T(47) | C(40) | C(40) | C(44) | C/T(9) | T | |||
| GCCTG - TTATT | 922 | T(46) | A(45) | A(45) | A(40) | T(9) | T | |||
| TTATT - AAGTG | 940-950 | TGTTCTTATTG(37) | TGTTCTTATTG(11) | MseI | ||||||
| AGTGA - ATTGT | 957 | C(56) | T(56) | T(44) | T(27) | T(11) | C | |||
| GTATT - TTCAA | 966 | C(56) | C(56) | C(56) | T(42) | T(20) | C | |||
| AATAA - TTAGT | 996 | T(45) | T(43) | T(40) | A(17) | A(16) | T | |||
| TTAGT - TATAT | 1002 | A(51) | A(51) | A(40) | T(42) | T(33) | A | |||
| TATAT - TAAAC | 1008 | A(51) | A(51) | C(40) | C(17) | C(20) | C | |||
| Dm1592 | 95D1-95D6 | AGACA - TTCAC | 911 | C(56) | T(44) | T(31) | C(56) | C(56) | C | |
| Dm0667 | 96E11-96F3 | TTTAA - ATTTC | 1032 | C(29) | G(35) | G(56) | G(42) | C(30) | G | |
| CTAGC - TTGAA | 1042 | C(51) | T(56) | T(46) | T(37) | C(35) | T | AluI | ||
| GTCCG - CGA | 1081 | A(29) | A/G(21) | A(26) | G(33) | A(14) | G | |||
| CGA - TTTAG | 1085-1100 | GGTATGGCATTCTATG(56) | GGTATGGCATTCTATG(48) | GGTATGGCATTCTATG(42) | GGTATGGCATTCTATG(48) | |||||
| AAACT - TTTTT | T(56)ATTG(37) | G(56)ATTA(45) | G(44)ATTA(45) | G(37)ATTA(37) | T(22)ATTG(15) | GATTA | ||||
| CAGAA - ATTGA | 1156 | A(56) | T(51) | T(30) | T(29) | A(40) | T | Tsp509I SspI | ||
| TTGGC - AAAAT | 1170 | C(42) | A(51) | A(44) | A(44) | C(26) | A | HaeIII MscI | ||
| AAAAT - TATTT | A(38)CG(40) | G(56)CA(56) | G(50)CA(37) | G(30)CA(35) | A(32)CA(21) | GCA | SnaBI TaiI CviRI NsiI | |||
| Q1058 | 96F10-F11 | Q1058 | Q1059 | |||||||
| Dm1657 | 97C1-97C3 | CATGG - CGCAT | 968 | C(37) | C(40) | A(30) | C(36) | C(24) | C | AciI HaeIII |
| AGTTT - TGTTT | 1024 | G(56) | T(56) | G(56) | G(37) | G(37) | T | |||
| GCCCC - CCATC | 1049 | G(40) | A(40) | A(40) | A(37) | G(40) | A | AciI | ||
| Dm2473 | 99D1-99D2 | GTCGC - GAATC | 1029 | T(40) | T(30) | T(40) | C(40) | C | NruI ThaI | |
| ATTGG - CCGGA | C*(11)T(11)CAG(22) | T(40)T(40)CAA(40) | T(23)T(25)CAA(23) | T(38)T(37)CAA(33) | T(35)C(35)CAG(33) | CTTCAA | DrdII | |||
| Dm2288 | 100C1-100C4 | CTGCT - CATTT | 1040 | C(42) | T(44) | T(47) | C(21) | C(29) | C | |
| TTGGC - GTTCC | GTTT(31)GGT(37) | GTTT(42)GGT(38) | ATTTGGT | AciI | ||||||
| CAAAG - TGCGT | 1139 | T(42) | C(37) | C(42) | T(42) | T(56) | C | AluI |