[an error occurred while processing this directive] BDGP: 3rd Chromosome: Source Hoskins et al.

Projects

3rd Chromosome: Source Hoskins et al.


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STS Cytological
location
Flanking
sequence
Nucleotide
position
Oregon R Canton S w;iso2;iso3 P strain 1
Q1028
P strain 2 Release 1
y;cnbwsp
RFLP?
Dm2467 61C1-61C2 ATCTT - ACTGG 219 T(45) T(46) T(29) A(22) A MseI
CTGTC - TTTTT 235 T(48) T(27) T(30)
Dm0688 61D1-61D2 AATTT - GGAGA 203 A(51) C(56) A C A
AGAAT - TGGAA 252 G(51) C(56) G C G
Q1050 62B4-62B5 Q1050 Q1052
Dm3835 62F1-62F2 CAACA - GCTAA 202 G(40) G(42) G(42) A(44) A(42) G
Dm2200 63D3 GCCGC - TTCCC 151 C(45) T(45) C(29) T(30) T(42) C
TTCCC - CCCTC 157 A(45) G(51) A(44) G(42) G(37) G AciI
Dm2086 65A6-65A10 TACGA - AAGCT 35 T(33) C(37) C(47) T(38) T T
TATTT - AAA 85-86 C(40)A(40) C(15)A/C(11) CA CA
AAA - TTTAA 90-94 TTT(51)AA(45) TTT(24)AA(28) TTTAA TTTAA
TTAAT - TTATA 101-110 ATATATTTAA(48) ATATATTTAA(33) ATATATTTAA ATATATTTAA
TTATA - GTATT 116-128 TATATAATATATA(56) TATATAATATATA(28) TATATAATATATA TATATAATATATA
ATTAA - GTATA 136 T(42) C(40) C(42) T(42) T T VspI TaiI
Dm0929 67A1-67A2 TAATG - GTTT 508 T(56) C(56) C(42) C(18) C(42) C
GTTT - GTGGT 513 A(40) T(42) A(40) T(24) T(44) T
Dm2202 67C10-67D1 CATTT - CCGAA 880 G(42) A(40) G(40) A(37) A(35) G
Q1052 68A1-68A2 Q1052 Q1060
Dm2215 68B1-68B2 ATTCA - CTAAT G(40)TTC(38) G(42)TTC(38) T(56)TTT(40) G(35)TTC(28) G(42)TTC(40) GTTC
TTCCC - TATCC 607 T(42) T(37) A(42) T(42) T(46) T
TTCAC - AATA 619 A(45) A(37) G(30) A(42) A(42) A
ATAA - AAC 624 G(47) G(42) A(44) G(42) G(44) G
AAC - TTCAC 628 A(47) A(44) T(47) A(42) A(42) A
TCAAC - ATTTT 641 T(45) T(40) C(42) T(38) T(40) T
GTTTT - GTGGG 753 T(45) T(40) C(42) T(42) T(42) T
Dm2544 69D1 TACTT - CGCTG 642 G(27) G(40) G(40) A(51) A(40) G HhaI
Dm3239 71F1-71F2 AGAGC - GAACT 73 C(40) C(37) T(35) T(35) C(40) T AluI
GTGTG - GAGAT 88 G(46) G(51) A(30) A(42) G(40) G
AATTC - TCCTA 114-132 AATTTTTAATGTTTCTAGG(33) AATTTTTAATGTTTCTAGG(37) AATTTTTAATGTTTCTAGG BfaI MseI Tsp509I
Dm1809 72C1-72D6 AGGCG - AGGAT 714 C(40) C(39) A(19) A C C HhaI
Q1060 73A1-A4 Q1060 Q1056
Dm3626 74F4-75A2 AGTGG - AAAGC 1267 A(30) A(56) G(56) A(33) A(56) A
ATGGG - GGTGG 1301 A(22) T(51) T(56) A(42) T(47) T
Dm2220 76B6-76B10 GCAAT - CCGAT 124 T(16) T(29) G(33) T(22) T(42) G Tsp509I
Dm3089 76C3 CGATG - TTTAT 51 T(51) T
AATAT - TA A(51)TG(51) A(45)TG(45) G(44)TA(44) A(40)TG(45) A(56)TG(56) GTA
TA - TATAT 161-167 TATGTAG(45) TATGTAG(45) CTACGTA(56) TATGTAG(42) TATGTAG(37) CTACGTA
Q1056 83A7-A8 Q1056 Q1058
Dm1568 86A5 TTGCA - CAAGA 155 A(51) A(38) C(27) A(33) A(30) A
AACTC - TCCAC 165 C(56) A(40) C(31) A(35) C(42) A
Dm3326 87F13-88A1 CTGGA - GAAAT 71-91 CATGAACTTATTCAGCAAC(37) CATGAACTTATTCAGCAAC(31) CATGAACTTATTCAGCAAC(31) BspGI
AAATA - CCCTA 96-102 GGAAATAA(42) GGAAATAA(37) GGAAATAA(37)
CTATT - CTAAT 139-144 A(40)ACTTC(34) G(35)ACTTT(35) A(37)ACTTC(37) G(37)ACTTT(42) G(42)ACTTT(44) AACTTC MseI
Dm3478 88A1 TCCGT - CAGCA 90 G(37) G(35) A(37) G(37) G(40) A CviRI RsaI
Dm0337 89C2-89C5 TCCTG - TATAT 856 C(51) G(56) G(31) C(40) C(42) G
Dm2709 89D2-89D4 CAGGG - GATGA 668 A(15) G(56) A(42) A(48) A(44) A
GAGCT - TCCAT C(27)CTG(46)TAT(39) G(30)CTC(33)TAC(42) A(42)CTG(38)TAT(38) C(56)CTG(42)TAT(56) C(42)CTG(46)TAT(42) ACTGTAT SacI
ATGAT - CCGCG 692 A(37) T(56) A(34) A(42) A(35) A
CCGCG - CCCAT 698 A(37) G(35) A(30) A(37) A(31) A HaeIII SacII SimI
GCCGA - GAATG 710-711 G(42)C(42) A(35)A(37) G(38)C(38) G(46)G(46) G(42)C(42) GC
GAATG - AGCGA A(34)GAA(56)A(56)G(56) C(27)GAC(35)T(27)C(27) A(42)GAA(46)A(42)G(44) A(42)GAA(56)A(56)G(51) A(42)GAA(56)A(56)G(46) A
AGCGA - CAGAG G(32)GAG(44)CAC(45)GTG(45)TGT(45) A(48)GAA(37)CAG(36)GTT(40)TGC(33) G(46)GAG(37)CAC(42)GTG(44)TGT(42) G(51)GAG(46)CAC(44)GTG(40)TGT(51) G(56)GAG(48)CAC(37)GTG(45)TGT(56) GGAGCACGTGTGT PmlI TaiI
Dm2494 89F4-90A2 GGATG - CATCC 503 C(38) C(20) C(56) T(44) C(42) C BccI
TCGGG - TACTA 623 C(37) A(51) C(39) A(40) C(35) C
GATTT - CAACT 659 G(45) G(45) G(42) C(29) G(35) G CviRI
ATGCT - AGCTA 678 T(40) A(51) T(38) A(30) T(42) T
Dm3952 90D1-90E2 AATTC - TTTTT 717 T(27) T(30) T(44)
Q1059 91A1-A2 Q1058 Q1059
Dm3293 92D1-91D2 TTGTG - GACCC 94 T(40) C(40) C(35) C(42) T(42) C
CTGAG - ACTGA 112 G(56) C(42) C(38) C(42) G(35) C
GGAAT - AGAAT 183 T(40) C(45) C(35) C(35) T(33) C Tsp509I
Dm1705 92D1-92D2 GATAT - CCAAT 473 C(51) C(42) T(42) T(42) C(28) C EcoRV
TCATA - AAG 518 C(33) C(28) A(42) A(33) C(28) C
AAG - CGGAT 522 C(42) C(56) A(37) A(44) C(42) C
TGCGG - AGATC 617 T(45) G(51) G(26) G(17) G(32) G
Dm2772 94C1-94C5 CATTT - GGCGG 409 C(45) C(40) T(40) T(42) C(42) C
Dm1690 94E6-94E12 AGTTT - GGATT 802 G(56) G(56) T(56) G(33) G(9) G
TAAAT - TGGAA 872 T(44) T(45) T(42) G(36) G(9) T Tsp509I
AACAT - TCTGA 902-903 A(44)T(48) A(51)T(51) A(40)T(45) T(42)A(42) T(9)A(9) TA
TCTTT - GCCTG 916 T(47) C(40) C(40) C(44) C/T(9) T
GCCTG - TTATT 922 T(46) A(45) A(45) A(40) T(9) T
TTATT - AAGTG 940-950 TGTTCTTATTG(37) TGTTCTTATTG(11) MseI
AGTGA - ATTGT 957 C(56) T(56) T(44) T(27) T(11) C
GTATT - TTCAA 966 C(56) C(56) C(56) T(42) T(20) C
AATAA - TTAGT 996 T(45) T(43) T(40) A(17) A(16) T
TTAGT - TATAT 1002 A(51) A(51) A(40) T(42) T(33) A
TATAT - TAAAC 1008 A(51) A(51) C(40) C(17) C(20) C
Dm1592 95D1-95D6 AGACA - TTCAC 911 C(56) T(44) T(31) C(56) C(56) C
Dm0667 96E11-96F3 TTTAA - ATTTC 1032 C(29) G(35) G(56) G(42) C(30) G
CTAGC - TTGAA 1042 C(51) T(56) T(46) T(37) C(35) T AluI
GTCCG - CGA 1081 A(29) A/G(21) A(26) G(33) A(14) G
CGA - TTTAG 1085-1100 GGTATGGCATTCTATG(56) GGTATGGCATTCTATG(48) GGTATGGCATTCTATG(42) GGTATGGCATTCTATG(48)
AAACT - TTTTT T(56)ATTG(37) G(56)ATTA(45) G(44)ATTA(45) G(37)ATTA(37) T(22)ATTG(15) GATTA
CAGAA - ATTGA 1156 A(56) T(51) T(30) T(29) A(40) T Tsp509I SspI
TTGGC - AAAAT 1170 C(42) A(51) A(44) A(44) C(26) A HaeIII MscI
AAAAT - TATTT A(38)CG(40) G(56)CA(56) G(50)CA(37) G(30)CA(35) A(32)CA(21) GCA SnaBI TaiI CviRI NsiI
Q1058 96F10-F11 Q1058 Q1059
Dm1657 97C1-97C3 CATGG - CGCAT 968 C(37) C(40) A(30) C(36) C(24) C AciI HaeIII
AGTTT - TGTTT 1024 G(56) T(56) G(56) G(37) G(37) T
GCCCC - CCATC 1049 G(40) A(40) A(40) A(37) G(40) A AciI
Dm2473 99D1-99D2 GTCGC - GAATC 1029 T(40) T(30) T(40) C(40) C NruI ThaI
ATTGG - CCGGA C*(11)T(11)CAG(22) T(40)T(40)CAA(40) T(23)T(25)CAA(23) T(38)T(37)CAA(33) T(35)C(35)CAG(33) CTTCAA DrdII
Dm2288 100C1-100C4 CTGCT - CATTT 1040 C(42) T(44) T(47) C(21) C(29) C
TTGGC - GTTCC GTTT(31)GGT(37) GTTT(42)GGT(38) ATTTGGT AciI
CAAAG - TGCGT 1139 T(42) C(37) C(42) T(42) T(56) C AluI