Berkeley Drosophila Genome Project
Projects
X Chromosome: Source Hoskins et al.
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| STS | Cytological location |
Flanking sequence |
Nucleotide position |
Oregon R | Canton S | w;iso2;iso3 | P strain 1 Q1028 |
P strain 2 | Release 1 y;cnbwsp |
RFLP? |
|---|---|---|---|---|---|---|---|---|---|---|
| Dm3513 | 1F1-1F3 | TCACT - GGAAC | 78 | G(42) | C(42) | G(46) | G(51) | G | ||
| GGACA - CTCAA | 90 | G(42) | A(44) | G(35) | G(35) | G | AluI | |||
| ACCCA - ACACT | 144 | C(42) | A(44) | C(56) | C(56) | C | ||||
| ACAAA - ATGGG | 174 | A(47) | T(44) | A(40) | A(35) | A | ||||
| Dm1729 | 2B8-2B9 | GAGCT - CTCGA | 477 | T(51) | C(56) | T(40) | T(42) | T | SacI | |
| Dm0127 | 2F1-2F6 | GTCGT - AGGGG | 1447 | C(37)AGT(40) | C(40)AGG(56) | C(30)AGT(42) | AAGG | |||
| CGCTC - CGCTC | 1450 | C(35) | T(42) | C(32) | C(35) | C | AciI BsrBI | |||
| Dm0106 | 3A6 | TCTGT - GAACG | G(37)TGA(37) | A(56)TGG(42) | G(45)TGA(34) | A(35)TGG(34) | ATGG | |||
| Q1028 | 3D-E | Q1028 | Q1034 | |||||||
| Dm3247 | 4C7-4C8 | AGTTT - CTGCG | 1607 | T(42) | C(56) | C(24) | C/T(22) | C/T11) | T | |
| CAGTC - GTGAA | 1628 | C(37) | G(37) | G(25) | G(28) | C/G(23) | C | |||
| GTGAA - ACGCC | 1634 | C(51) | T(44) | T(25) | C/T(19) | T/C(37) | C | |||
| GTTTT - CCGAA | 1766 | C(56) | T(56) | T(44) | T(42) | T(20) | C | |||
| Dm1954 | 4E1 | ACAAT - ATCGA | 149 | T(45) | A(56) | A(42) | T(56) | T(40) | T | Tsp509I |
| Dm3001 | 5C1-5C2 | AATTC - GGATC | 695 | G(27) | G(35) | A(41) | G/A(22) | G(30) | G | |
| TCCAA - ACTTT | 704 | T(37) | T(41) | G(50) | T(30) | T(33) | T | |||
| ATTTT - ACAAT | 888 | T(30) | C(56) | T(42) | C(34) | C(42) | C | |||
| Q1034 | 6E | Q1034 | Q1030 | |||||||
| Dm2006 | 7A2-7A5 | CCCAG - ACATG | 582 | T(56) | C(45) | T(30) | T/C(26) | T/C(17) | T | RsaI |
| CCCCC - TCTTG | 618 | DEL(98) | C(40) | DEL(98) | DEL(98) | DEL(98) | DEL | |||
| TCTTG - C | 624 | C(37) | C(46) | C(31) | A/C(26) | A/C(33) | C | |||
| C - CAATC | 626 | G(40) | A(45) | G(20) | G(42) | G(42) | G | |||
| ACTCG - CCAGC | 647 | A(40) | A(35) | A(42) | A/T(30) | A/T(29) | A | TaqI BspGI | ||
| Dm1849 | 7D10-7D16 | GGTT -TCCCT | 180 | A(30) | A(51) | T(28) | T(28) | T(28) | A | |
| Dm0426 | 8C1-8C2 | CATAT - TA | 1223 | A(51) | A(51) | A(42) | G/A(24) | G/A(28) | A | |
| TA - GTACA | 1226-7 | T(51)G(42) | T(51)G(42) | T(44)G(42) | TA | |||||
| ACATA - GTACT | 1234 | T(56) | T(56) | T(48) | C/T(17) | C/T(11) | T | NdeI RsaI SnaBI | ||
| TACTT - ATGTTG | 1241 | G(42) | A(51) | G(42) | A(40) | A(42) | A | MseI | ||
| ACAAC - TACAA | 1352 | T(40) | T(40) | T(42) | A/T(23) | A/T(14) | T | |||
| Dm3169 | 8D1-8D5 | GCCGC - CACGA | 1280 | T(45) | T(40) | T(44) | C/T(13) | C/T(19) | T | BsrBI |
| CCCGT - TGCTC | 1373 | G(37) | A(29) | G/A(37) | G/A(30) | G/A(39) | G | |||
| Dm1980 | 9B1-9B2 | GGTGA - TTCAC | 35 | A(48) | C(40) | C(40) | C(40) | C(40) | C | EcoRI Tsp509I |
| ATCTA - CAAAA | 62 | A(51) | A(43) | T(40) | A(40) | A(45) | T | |||
| GCAAA - CATAA | A(51)TTA(51)AAG(56) | C(45)TTC(42)AAA(56) | C(35)TTC(40)AAA(40) | C(29)TTC(34)AAA(25) | C(29)TTC(27)AAA(27) | CTTCAAA | MseI Tsp509I | |||
| Q1030 | 10E | Q1030 | Q1035 | |||||||
| Dm3746 | 10F7-10F8 | TACAC - TCTCT | 79-80 | G(51)C(51) | A(51)A(51) | G(40)C(40) | A(45)A(46) | A(35)A(35) | AA | |
| TCACA - CCGTA | 137 | G(42) | T(43) | G(35) | T(44) | T(37) | T | |||
| Dm2024 | 11B1-11B2 | GAAC(A)9 - (A)5GAT | 172 | A(47) | C(44) | A | C(56) | C(42) | C | |
| Q1035 | 13E9 | Q1035 | ||||||||
| Dm0478 | 13A8-13A9 | TGGCA - TTGGC | 70 | A(40) | A(51) | G(35) | A(39) | A | MunI Tsp509I | |
| AGACT - TAGTT | 145 | A(45) | A(45) | C(35) | A(37) | A | BfaI | |||
| Dm3491 | 13D1-E4 | CATTG - CCGCC | 60 | T(46) | T(46) | C(46) | T(39) | T | EciI | |
| CACTG - ACGAG | 170 | A(56) | G(40) | A(35) | A(35) | A | BspGI | |||
| Dm1911 | 14B3-14B4 | TGAAT - GAATG | 1134 | A(46)C(42) | A(40)C(37) | G(43)T(40) | G(21)T/C(21) | GT | ||
| Dm3790 | 15B1-15B2 | TGTGC - CTTAA | 106 | C(44) | A(45) | A(37) | C(50) | C | ApaLI CviRI | |
| ACTAT - CGCCT | 221 | C(40) | T(40) | T(40) | T(45) | T | AciI EciI | |||
| Dm0509 | 16F5-16F8 | GAGGG - CCGCT | 58 | G(37) | T(45) | G(37) | T(40) | T | HaeIII SimI | |
| Q1035 | 17C | |||||||||
| Dm1846 | 17A1-17A2 | ATTTC - ACTTG | 2150 | A(37) | C(45) | A(42) | A(46) | C | ||
| Dm2754 | 17B5-17C4 | AGTAG - GTATG | 402 | C(35) | C(38) | C(56) | T(34) | C | ||
| CATTT - CAGCG | 423 | C(33) | T(42) | C(40) | T(22) | C | ||||
| TGCGG - TTCTC | 444 | G(42) | T(38) | G(40) | T/G(34) | GT | ||||
| CAAAA - ACCGG | 465 | A(34) | A(34) | T(56) | T(26) | T | ||||
| CCGTT - GCTAA | 512 | T(27) | T(35) | T(40) | C(51) | C | ||||
| Dm0505 | 19E1-19E3 | GCTGC - TGGCT | 90 | A(42) | A(42) | A(30) | A(30) | A | CviRI NlaIII | |
| CGGAG - ATATG | 170 | C(44) | T(56) | C(56) | C(37) | C | NdeI | |||
| ATATA - TATTG | 190 | A(56) | A(42) | A(42) | A(42) | A | ||||
| Dm0529 | 20B1-20B2 | GGCTC - GTGTC | 837 | G(45) | T(40) | T(42) | G(56) | G |