May 10-12, 2024: There is a planned power outage for the weekened of May 10-12. During this time the fruitfly.org and insitu.fruitfly.org servers will be inaccessible. We plan to have the servers back up sometime on May 12. We apologize for the inconvenience.

Searches

Genie: Gene Finder Based on Generalized Hidden Markov Models

Help

Genie was a collaborative project involving the Computational Biology Group at the University of California, Santa Cruz, the Human Genome Informatics Group at the Lawrence Berkeley National Laboratory and the Berkeley Drosophila Genome Project. The main authors of Genie are David Kulp and Martin Reese.

Genie references:

  1. D. Kulp, D. Haussler, M.G. Reese, and F.H. Eeckman (1996). A generalized Hidden Markov Model for the recognition of human genes in DNA. ISMB-96, St. Louis, MO, AAAI/MIT Press.

  2. M.G. Reese, F.H. Eeckman, D. Kulp, D. Haussler (1997). Improved splice site detection in Genie. Proceedings of the First Annual International Conference on Computational Molecular Biology (RECOMB) 1997, Santa Fe, NM, ACM Press, New York.