Submissions (cont.)

• The Department of Biomathematical Sciences, Mount Sinai School of Medicine, New York

  • Credit
    • Gary Benson
  • Method
    • Tandem repeats finder (TRF v2.02) uses theoretical model of the similarity between adjacent copies of pattern (pattern from 1 -500 bp recognized); dynamic programming for candidate validation.
    • Fully automatic; very fast (seconds per 1Mb).
    • http://c3.biomath.mssm.edu/trf/Adh.fa.2.7.7.80.10.50.500.1.html
  • References
    • Benson (1999), Nucl. Acids Res., 27(2), 573-580.
  • URL
    • http://c3.biomath.mssm.edu/trf.html

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