Berkeley Drosophila Genome Project
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2nd Chromosome: Source Hoskins et al.
Click [HERE] to view Table Legend
| STS | Cytological location |
Flanking sequence |
Nucleotide position |
Oregon R | Canton S | w;iso2;iso3 | P strain 1 Q1028 |
P strain 2 | Release 1 y;cnbwsp |
RFLP? |
|---|---|---|---|---|---|---|---|---|---|---|
| Dm0447 | 21D1-21D2 | TCTCT - ACGGC | 449 | C(37) | C(40) | C(42) | T(17) | C | ||
| TCTCT - GACCT | C(32)TT(32) | CTT | ||||||||
| Dm0375 | 21E3-21F3 | TACGG - AGTGT | 32 | A(29) | A(27) | G(30) | A(27) | A | BscGI | |
| GTCGC - CTGGT | 103 | C(32) | C(33) | A(21) | C(37) | C | ||||
| Q 1037 | 22D1-D2 | Q1037 | Q1040 | |||||||
| Dm2641 | 23A1-23A3 | ACTTG - CCCAG | 32 | A(40) | A(51) | G(56) | A(47) | A(42) | G | SimI HaeIII |
| TCCAT - AAGAA | 107 | G(56) | G(56) | A(48) | A(48) | A(46) | G | NlaIII | ||
| GGCCA - CGGCT | 174 | G(35) | A(40) | G(37) | G(37) | G(35) | A | AciI | ||
| Dm0611 | 23E1-23E4 | ACAAA - CTTTA | A(56)AC(42) | T(45)AG(40) | T(51)AG(45) | T(45)AG(45) | T(51)AG(51) | TAG | AluI | |
| ATCTT -TATAG | 153 | C(48) | C(46) | T(56) | C(46) | C(46) | C | |||
| ACTCG - TGTGT | 169 | C(51) | C(51) | C(27) | G(56) | G(56) | C | |||
| GCCAC - CAGTT | 186 | T(45)G(45) | C(45)C(45) | T(34)G(34) | T(40)G(45) | T(51)G(51) | CC | CviRI PstI | ||
| Dm2235 | 25A3 | TATTA - AAATC | 141 | G(48) | A(42) | A(37) | A | MseI | ||
| CATAT - GATAT | 156-163 | DEL(98) | DEL(98) | DEL(98) | TATAATAT (42) | TATAATAT (42) | TATAATAT | NdeI | ||
| GTAAT - ATTGT | 174 | A(40) | T(35) | T(56) | A(40) | A(42) | A | |||
| ATTGG - TTG | 233 | T(56) | T(56) | T(56) | C(44) | C(56) | T | |||
| TTG - AGTAA | 237-238 | G(56)A(56) | G(56)A(56) | G(56)A(56) | T(42)T(40) | T(42)T(40) | GA | |||
| Dm2207 | 26D1-26D2 | TCCGT - TCCAG | 28 | G(51) | G(51) | G(40) | A(45) | A(45) | G | BspGI |
| TCTTC - GT | 118 | G(56) | T(56) | T(42) | G(44) | G(43) | G | |||
| GT - TAGTT | 121 | G(51) | A(56) | A(37) | G(35) | G(40) | G | |||
| CGTCC - AGACG | 148 | T(51) | C(51) | C(40) | C(46) | C(46) | T | BfaI | ||
| AGGTA - TCGTT | 163 | G(40) | G(45) | G(40) | C(40) | C(45) | G | RsaI | ||
| Dm3015 | 29A2 | AACTG - CTTTT | 23 | T(40) | C(56) | T(34) | T(35) | C(42) | C | |
| TGTTT - AAAGT | 114 | A(56) | G(56) | A(44) | A(56) | G(56) | G | DraI MseI | ||
| AACAC - CGGTT | 147 | T(39) | A(56) | T(35) | T(39) | A(38) | A | |||
| CAACC - GGTGC | 171 | T(31) | A(32) | A/T(14) | A(56) | A(42) | A | |||
| Dm0274 | 29A5-29B4 | GGTAC -CGGTA | 741 | G(29) | G(35) | G(38) | T(42) | G(37) | AciI ThaI | |
| TTAAT - CAATT | 805 | G(40) | G(42) | G(51) | A(44) | G(42) | CviRI | |||
| GCCGA - AGGTG | 832 | C(40) | C(40) | C(42) | T(46) | C(56) | T | |||
| Q 1040 | 29C1-C2 | Q1040 | Q1042 | |||||||
| Dm0434 | 30A3-30A6 | TTTTT - AACAT | 73-75 | A(35)A(35)A(35) | T(35)A(35)A(34) | A(21)A(27)A(27) | T(21)T(27)T(29) | T(4)T(4)T(4) | TAA | |
| TAGGC - AAAAA | 113-114 | A(56)A(56) | A(47)C(47) | A(13)A(13) | DEL(98) | DEL(98) | AC | |||
| Dm0652 | 31F3-32A1 | AGCAA - CGAAA | 742-743 | C(9)A(9) | C(37)C(37) | C(24)A(24) | T(46)T(33) | C(24)A(25) | CA | BsbI |
| AGTTT - AACGA | 821 | A(51) | A(51) | A(42) | G(42) | A(26) | A | DraI MseI PmeI | ||
| TTATG - AATGC | 900 | G(51) | G(56) | G(44) | C(37) | G(42) | G | CviRI | ||
| TACAA - TTGTC | 929 | C(46) | T(56) | T(48) | T(13) | T(44) | T | Tsp509I | ||
| Dm4048 | 32A1-32A2 | CATAC - TTAGA | 113 | T(56) | A(56) | A(42) | A(35) | T(42) | A | |
| GGTTG - CGATA | 168 | C(46) | G(42) | G(37) | G(35) | C(35) | G | |||
| Dm3374 | 33A1-33A2 | GATAT - GCAGT | 733 | T(51) | G(40) | G(44) | G(42) | T(44) | G | CviRI |
| TCCCA - CGGAT | 758-759 | A(42)A(42) | G(42)T(43) | G(42)T(42) | G(26)T(35) | A(24)A(46) | GT | |||
| TAAAA - GAAAT | 769 | T(42) | C(51) | C(56) | C(42) | T(44) | C | |||
| GCATT - ACACA | 802 | G(40) | A(51) | A(56) | A(33) | G(33) | A | MseI | ||
| CACAG - GAA | 809 | C(37) | T(43) | T(44) | T(42) | C(33) | T | |||
| GAA - GTACG | 813 | T(42) | A(40) | A(42) | A(51) | T(42) | A | |||
| Dm2112 | 33A1-33A2 | TAAAA - TTATG | 67 | T(35) | G(32) | T(56) | T(56) | G(45) | T | Tsp509I |
| AACAT - AATCG | 104 | A(42) | T(45) | A(56) | A(56) | A(42) | A | |||
| GAGAA - AGCGG | 125 | A(56) | G(51) | A(42) | A(46) | G(42) | A | BsrBI | ||
| Dm0240 | 33A3-33A8 | ATGTG - GTGCA | 514 | C(24) | C(24) | T(56) | C(37) | C(47) | T | |
| CATAT - TTTGG | 546 | DEL(27) | DEL(52) | DEL(48) | GTAT(44) | DEL(33) | DEL | NdeI | ||
| Dm2479 | 33D4 | ATAGT - GGCAA | 75 | A(17) | A(40) | A(40) | A(45) | T(40) | ||
| TTTTC - CATTG | 110 | G(37) | G(56) | G(44) | G(56) | T(44) | G | |||
| Dm3635 | 34C1-34C2 | CCGCA - AATCG | 1494 | C(27) | C | T(40) | C(44) | C(42) | T | |
| GCTTG - ATAAA | 1552 | A(27) | G | A(42) | A(56) | G(42) | A | |||
| AAAAT - TAAGA | 1560 | G(33) | T | G(56) | G(44) | T(29) | G | MseI Tsp509I | ||
| Dm0393 | 34D1-34D6 | TAACA - TAATT | 50 | A(42) | A(42) | T(37) | A(33) | A(37) | A | MseI VspI |
| ACTGC - GTGAG | 191-192 | T(46)C(33) | A(42)A(42) | A(48)A(56) | A(29)A(29) | T(38)C(38) | TC | BssSI CviRI | ||
| Dm0012 | 35A1-35A2 | AATTT - TAAAG | 74 | T(42) | G(23) | T(42) | G(51) | T(44) | T | DraI MseI |
| Q 1042 | 35E1-E2 | Q1042 | Q1805 | |||||||
| Dm0043 | 35F1-35F2 | GATGG - CAGTC | 60 | A(30) | A | A(35) | A(40) | T(37) | A | |
| Dm2451 | 36B3-36C1 | TCCTT - AGACA | 108 | G(40) | A(45) | G(44) | A(56) | A(32) | G | AflII MseI |
| AGAAT - AA | 125 | T(51) | C(45) | T(40) | C(56) | C(56) | T | |||
| AA - AGT | A(40)AT(40) | T(45)AA(51) | A(45)AT(56) | T(56)AA(51) | T(56)AA(40) | AAT | ||||
| AGT - AAT | 134 | T(40) | C(56) | T(45) | C(51) | C(38) | T | |||
| AAT - CCCAA | A(45)T(45)TA(45)TA(51)TT(56) | A(45)T(45)TA(51)TA(40)TT(40) | A(56)T(56)TA(46)TA(38)TT(40) | |||||||
| TCAAA - GTGAA | 157 | C(42) | T(56) | C(51) | T(56) | T(56) | C | TaiI | ||
| GTGAA - GTACT | 163-164 | A(56)T(42) | A(56)T(56) | AT | ScaI | |||||
| Dm0353 | 39A3-39A7 | CTGCT - CAGCT | 26 | G(51) | A(42) | G(40) | A(42) | A(42) | G | CviRI PstI |
| TTCCG - GTATC | 41 | A(51) | C(40) | C(42) | C(42) | C(37) | C | AciI ThaI | ||
| CTCGA - ACAGC | 60 | C(47) | T(34) | C(40) | C(42) | C/T(21) | C | |||
| CTGTG - TTTTC | 85 | G(40) | A(40) | A(51) | A(51) | A(56) | A | |||
| TGGGA - AAATC | 212 | A(56) | A(56) | A(56) | T(42) | A(47) | A | |||
| Dm0627 | 40A6-40B2 | GCAAT - TCTGA | 304 | A(51) | T(42) | T(25) | T(51) | T(40) | T | Tsp509I |
| Dm0975 | 41C1-41C6 | GCGTG - CGTGC | 140-143 | CGTG(51) | ||||||
| Dm3495 | 42A1-42A2 | CGGGG - CTTGT | 83 | G(56) | T(37) | G(35) | G(51) | G/T(17) | T | SimI |
| CGAGA - GTCAG | 132 | T(42) | C(35) | T(20) | C(16) | C(19) | C | AatII TaiI | ||
| Dm2609 | 42A8-42A16 | TTTTT - AAATT | 77-78 | T(40)A(40) | T(56)A(56) | T(56)T(56) | T(56)A(23) | |||
| Dm2106 | 42B4-42C2 | ACCGA - GCTAC | 114 | A(56) | G(45) | G(39) | G(25) | A(22) | A | AluI |
| AGTTT - TAAGC | 140 | C(51) | C(51) | T(56) | C(56) | C(56) | C | MseI | ||
| AGCAG - AGTCC | 148 | G(56) | G(56) | A(34) | G(34) | G(32) | G | |||
| TGCGA - GGAGA | 160 | C(46) | C(46) | T(35) | C(34) | C(35) | C | BccI | ||
| GCTTT - ACAGG | 176 | C(42) | C(51) | T(39) | C(40) | C(40) | C | |||
| Q 1805 | 43E9 | Q1805 | Q1049 | |||||||
| Dm0735 | 43E12-43F2 | CCAAG - TGCGC | 74 | C(40) | T(35) | C(40) | T(34) | T(34) | T | AluI |
| ATCTA - GACAT | 97 | C(42) | T(42) | C(400 | C(45) | C(36) | T | Pfl1108I | ||
| Dm0746 | 44B1 | GTATC - GTTCT | 140-145 | GCACGG(45) | GCACGG(33) | GCACGG(40) | GCACGG(51) | GCACGG | BscGI | |
| Dm2209 | 44D1-44D2 | CAATA - AAGTA | 128 | A(45) | G(51) | A(26) | G/A(10) | G(29) | G | |
| TATCA - AACAT | 155 | A(46) | G(40) | A(35) | G/A(16) | G(32) | G | |||
| Dm0722 | 44D5-44E2 | CACCG - TTACT | G(27)TTT(20) | G(32)TTC(14) | G/*(11)TTC/T(11) | MspI PinAI | ||||
| Dm3845 | 46B1-46B2 | TTTTT - AATAC | 159 | A(33) | C(51) | A(51) | C(35) | C | DraI MseI | |
| Dm0340 | 47D6-47E2 | GCGAA - TTTTA | 205 | T(28) | A(32) | T(37) | T(40) | T(40) | T | |
| Dm0084 | 48C5-48D2 | CTCAT - CAGCT | 762 | T(56) | T(51) | T(56) | C(35) | T(49) | T | |
| TTATT - GAGAG | 772 | C(51) | C(56) | A(44) | C(42) | C(47) | C | TaqI | ||
| TAAGT - ATTTC | 808 | A(51) | G(51) | G(40) | G(40) | G(40) | A | Tsp509I | ||
| TGAGA - GCCGA | 866 | C(51) | C(51) | C(40) | C(42) | T(40) | C | |||
| Q 1049 | 49D1-D3 | Q1049 | Q1047 | |||||||
| Dm2480 | 50A3-50A4 | CCTAA - GACGT | 1032 | A(51) | DEL(98) | DEL(53) | A(35) | A(33) | A | |
| TATCC - ACAAC | 1060 | C(37) | T(37) | T(51) | C(44) | C(42) | C | |||
| Dm0064 | 50C23-50D1 | TTTAC - TTTCT | 119 | A(37) | T(31) | A(40) | A(31) | A(37) | A | |
| GCTAA - TTACT | 140 | G(33) | A(29) | G(40) | A(40) | A(40) | G | Tsp509I | ||
| TATTA - TACAT | 154 | T(40) | A(30) | T(43) | A(35) | A(42) | T | MseI VspI | ||
| TTTTT - AAAAA | 164 | G(9)T(13) | A(36)A(36) | G(35)T(50) | G(27)A(44) | G(42)A(44) | GT | DraI MseI | ||
| Dm3709 | 51E10-51E11 | AGAAT - GAATC | C(35)AG(35)AATAA(42) | C(31)AG(29)AATAA(35) | C(35)AG(35)AATAA(37) | CAGAATAA | ||||
| Dm0788 | 51E5-51E8 | AAAAA - CAACA | 1012 | C(40) | T(51) | T(33) | C(26) | C(42) | C | |
| Dm2663 | 51E5-51E8 | TCATT - TTTTT | 156 | A(42) | G(22) | G(36) | A(42) | A(42) | A | |
| Dm0754 | 52B1-52B2 | AATCA - ATATA | 916 | C(33) | T(51) | T(37) | T(44) | T(46) | C | |
| Dm2192 | 54A2-54B1 | AAATG - TGGTT | 608 | T(56) | G(56) | T(42) | G(37) | G(51) | T | |
| ATTTC - GGAAT | 639 | G(51) | C(42) | G(32) | G(48) | G(51) | G | BspEI MspI | ||
| Dm2427 | 54C3-54C11 | TCGCT - CCTAC | 185 | T(42) | A(46) | T(36) | T(45) | T(40) | T | |
| Dm3490 | 54E8-54F2 | AGTGT - TTTTT | 169 | T(44) | T(56) | T(56) | T(46) | A | ||
| Dm0851 | 55A2-55B1 | GAGTT - CGAGT | 737 | G(43) | A(33) | A(35) | A(40) | A(17) | A | |
| Dm1720 | 55A2-55B1 | ACTGG - GAAAA | 251 | G(56) | A(48) | G(35) | G(27) | G(14) | G | |
| TAAGT - TGCCA | 271 | C(40) | C(45) | C(21) | G(35) | G(38) | C | |||
| Dm2631 | 55A2-55B1 | TTTTA - TTGCG | 161 | T(46) | T(51) | T(20) | G(56) | G/T(11) | T | |
| TGCCA - CATCG | 179 | T(40) | C(37) | T(34) | T(34) | T/C(28) | T | |||
| Q 1047 | 57A3 | Q1047 | ||||||||
| Dm0602 | 56B1-56B2 | ATCCC - CCGGT | 80 | T(43) | G(56) | T(23) | T(44) | T | AciI | |
| GGATT - CTC | 95 | A(37) | G(47) | A(35) | A(33) | A | ||||
| CTC - TTCT | 99 | T(33) | C(44) | T(42) | T(33) | T | ||||
| TTCT - GGCAG | 104 | T(56) | G(48) | T(42) | T(35) | T | ||||
| GGTGT - TTCCG | 152 | A(56) | G(56) | A(50) | A(40) | A | ||||
| CTGGG - CACCT | 178 | C(40) | A(56) | C(42) | C(40) | C | HaeIII | |||
| AGTTC - GTTTG | 221 | T(56) | C(42) | T(37) | T(17) | T | ||||
| Dm0800 | 56B1-56B2 | AAAA - TAAAA | 1298 | T(42) | T(40) | A(51) | T(45) | A | ||
| TTTAT - AAGTG | 1319 | T(31) | A(42) | T(45) | T(33) | T | MseI | |||
| CTAGG - AATAT | A(29)TAC(25) | A(43)TAC(17) | T(40)TAA(51) | A(12)TAC(24) | TTAA | MseI | ||||
| AATAT - ATATA | 1345 | G(32) | C(32) | G(51) | G(29) | G | ||||
| ATAGT - GCAAC | 1364 | A(10) | A(29) | G(45) | A(15) | G | ||||
| Dm0824 | 57A4-57A6 | GAGCT - GGCGC | 64 | G(42) | T(42) | G(44) | T(42) | T | ||
| TATAT - CAGCT | A(51)TT(42) | A(51)TT(51) | ||||||||
| Dm0063 | 57E2-57E8 | TTAGC - TAAAC | G(35) | G(45) | G(34) | G | ||||
| Dm2274 | 58A4 | CCCCC - TTTTC | 129-138 | TATTTTCCCG(51) | GA********(42) | AATTTTCTCG(56) | GA********(30) | T | BscGI | |
| Dm1544 | 58B10-58C4 | GGTGA - GGTAT | 99 | C/T(19) | C(51) | C(42) | C/T(13) | C | BccI | |
| GTGGT - AACGA | 144 | A(33) | A(56) | G(56) | G/A(17) | A | ||||
| Dm1639 | 58F2-58F7 | TTCCA - CGGAT | A(40)ATC(39) | G(35)ATT(56) | A(35)ATC(37) | A(40)ATC(40) | AATC | BspEI MspI | ||
| ATGAT - GGTTT | 175 | C(40) | G(56) | C(56) | C(30) | C | DpnI Sau3AI BccI | |||
| Dm2101 | 59A1-59A3 | AGTAA - TAGAA | 690 | T(11) | T(45) | G(42) | A(37) | T | Tsp509I | |
| ACTTC - TTACT | 811 | A(40) | G(51) | T(42) | G(42) | |||||
| CAGCC - CTGGA | 858 | G(22) | T(37) | G(40) | T(32) | G | AciI | |||
| Dm2487 | 59F2 | TATCT - ATACT | 49 | A(40) | G(45) | A(40) | A(33) | A | ||
| ATTCC - AACAA | 71 | A(46) | A(45) | G(51) | A(30) | G | ||||
| AGGCA - GCGAT | 107 | T(51) | C(39) | T(42) | T(42) | T | NlaIII SphI ThaI | |||
| CAGAC - CCGCA | 173 | A(40) | G(35) | G(40) | G(35) | G | ||||
| CAGCA - ACGGA | 182 | G(33) | C(43) | C(56) | C(42) | C | ||||
| Dm0327 | 60B2-60B10 | TATGTGTG - TGTGTGCT | 100-101 | T(39)A(39) | DEL(98) | DEL(98) | DEL(98) | TA | ||
| Dm2247 | 60D10-60D11 | TTCGG - GGGCG | 158 | C(42) | T(56) | T(44) | T(42) | C | AciI |