Berkeley Drosophila Genome Project
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Projects
3rd Chromosome: Source Exelixis
Click [HERE] to view Table Legend
| STS | Polytene location |
Q1050 | Q1052 | iso3 |
|---|---|---|---|---|
| Dm2467 | 61C1-61C2 | catgtccagtTaagatatata | catgtccagtAaagatatata | catgtccagtAaagatatata |
| Dm0688 | 61D1-61D2 | cttaattccaGattcttgtcc | cttaattccaCattcttgtcc | cttaattccaCattcttgtcc |
| Dm2739 | 6.10E+03 | ccccgaatttTgttTtacaggatat | ccccgaatttTgttTtacaggatat | ccccgaatttCgttCtacaggatat |
| Dm2010 | 62A6-62A10 | tcacatattgattg[GAGTTAATG]gcatgggcaata[C]gg[TTTATTCTAGAAAC]tttatagctac | tcacatattgattg[GAGTTAATG deletion]gcatgggcaata[A]gg[TTTATTCTAGAAAC deletion]tttatagctac | tcacatattgattg[GAGTTAATG deletion]gcatgggcaata[A]gg[TTTATTCTAGAAAC deletion]tttatagctac |
| Dm0890 | 62A9 | taatttacaaTagtTcgccaagcct | taatttacaaTagtTcgccaagcct | taatttacaaCagtAcgccaagcct |
| Q1050 | 62B4-62B5 | Q1050 | Q1052 | iso3 |
| Dm3835 | 62F1-62F2 | gcgaacaacaAgctaagccaa | gcgaacaacaAgctaagccaa | gcgaacaacaGgctaagccaa |
| D1199 | 63B1-63B8 | ctcttttcttTtaatttgcat | ctcttttcttTtaatttgcat | ctcttttcttGtaatttgcat |
| Dm2200 | 63D3 | ccgcTttcccGccctcggtgg | ccgcTttcccGccctcggtgg | ccgcCttcccAccctcggtgg |
| Dm2002 | 63E4-63E5 | attttggtacAaatgtggagc | attttggtacAaatgtggagc | attttggtacGaatgtggagc |
| Dm2068 | 64D1-64D2 | ccggtcagtcCgaggttcatg | ccggtcagtcCgaggttcatg | ccggtcagtc[-C]gaggttcatg |
| Dm3316 | 65B4-65B5 | gccaaaagtcGcgttgatccg | gccaaaagtcGcgttgatccg | gccaaaagtcTcgttgatccg |
| Dm0258 | 65C1-65C2 | ccttgttgctCttattatatt | ccttgttgctCttattatatt | ccttgttgctTttattatatt |
| tggtgctgctTtgtgccacac | tggtgctgctTtgtgccacac | tggtgctgctGtgtgccacac | ||
| Dm0262 | 65C1-65C2 | aggatctgtaTgcaccggtaa | aggatctgtaCgcaccggtaa | aggatctgtaTgcaccggtaa |
| Dm0926 | 66A1-66A2 | tcaagacctgAaaattctatttat | tcaagacctgCaaattctatttat | tcaagacctgAaaattctatttat |
| cttaccattaAggAttttatgttt | cttaccattaAggAttttatgttt | cttaccattaGggGttttatgttt | ||
| gaaccgcatcGagaatcctgc | gaaccgcatcTagaatcctgc | gaaccgcatcGagaatcctgc | ||
| ccttcagctaAccggcatcct | ccttcagctaGccggcatcct | ccttcagctaGccggcatcct | ||
| Dm0931 | 66B13-66C2 | gcccactgtaCacGttgccgctgt | gcccactgtaCacGttgccgctgt | gcccactgtaGacAttgccgctgt |
| tggatccccgCggagcagagg | tggatccccgCggagcagagg | tggatccccgTggagcagagg | ||
| Dm3667 | 66C8-66C9 | tagtagggctTGaatttggaat | tagtagggctTGaatttggaat | tagtagggctATaatttggaat |
| Dm0378 | 66C8-66D2 | |||
| Dm0631 | 66E2-66E6 | agtgtgacagCtCcaatttatgc | agtgtgacagAtTcaatttatgc | agtgtgacagCtCcaatttatgc |
| attgactttaaGcaccaatattggaGaggcctatttaagttgTaattaatattttgG | attgactttaaAcaccaatattggaCaggcctatttaagttgCaattaatattttgC | attgactttaaGcaccaatattggaGaggcctatttaagttgTaattaatattttgG | ||
| tgttttgcttTAattttAgtacatatttgt | tgttttgcttCTattttGgtacatatttgt | tgttttgcttTAattttAgtacatatttgt | ||
| caaattgcacTgagttgggcg | caaattgcacAgagttgggcg | caaattgcacTgagttgggcg | ||
| Dm0929 | 67A1-67A2 | taatgcgtttTgtggtacgaa | taatgcgtttTgtggtacgaa | taatgcgtttAgtggtacgaa |
| Dm2272 | 67A3-67A4 | no SNP | no SNP | no SNP |
| Dm0947 | 67B2-67B5 | cggacatacAtatgtacatac | cggacatacAtatgtacatac | cggacatacTtatgtacatac |
| Dm2202 | 67C10-67D1? | agaacatttAccgaatgtaa | agaacatttAccgaatgtaa | agaacatttGccgaatgtaa |
| Dm1795 | 67C2 | catcgctccaCgaagtcgtgc | catcgctccaAgaagtcgtgc | catcgctccaAgaagtcgtgc |
| accgagttagTcgggttttct | accgagttagCcgggttttct | accgagttagTcgggttttct | ||
| Q1052 | 68A1-68A2 | Q1052 | Q1060 | iso3 |
| Dm2215 | 68B1-68B2 | tcaGttCctaatttcccTtatcctttcacAaataGaacAttcactttcaacTatt | tcaGttCctaatttcccTtatcctttcacAaataGaacAttcactttcaacTatt | tcaTttTctaatttcccAtatcctttcacGaataAaacTttcactttcaacCatt |
| cggtggttttTgtgggtcatg | cggtggttttTgtgggtcatg | cggtggttttCgtgggtcatg | ||
| Dm2803 | 68C10-68C1? | HET | acatagcccgTctacctacaa | acatagcccgTctacctacaa |
| Dm0920 | 68C2-68C3 | aatagctttgCgctttatatt | aatagctttgCgctttatatt | aatagctttgAgctttatatt |
| HET | acttgttgatTcgaaagtag | acttgttgatTcgaaagtag | ||
| Dm2130 | 68F1-68F4 | gtaccaccaatTttaa[CAA]4tcagcttggt | gtaccaccaatAttaa[CAA]9tcagcttggt | gtaccaccaatAttaa[CAA]8tcagcttggt |
| Dm0211 | 68F8-69A5 | cgttcaaataCaccatcattTacaagcttac | cgttcaaataCaccatcattTacaagcttac | cgttcaaataTaccatcattAacaagcttac |
| attacttttgTcgCgcttTCatcgtttttg | attacttttgTcgCgcttTCatcgtttttg | attacttttgGcgGgcttATatcgtttttg | ||
| gaaatttgAagtaacGttaacttaagaaCaaatttTCgaaaccctaG | gaaatttgAagtaacGttaacttaagaaCaaatttTCgaaaccctaG | gaaatttgGagtaacTttaacttaagaaAaaatttCTgaaaccctaA | ||
| Dm2544 | 69D1 | ggcagcagcgTaagtatctcg | ggcagcagcgTaagtatctcg | ggcagcagcgCaagtatctcg |
| Dm2127 | 70E4-70E5 | acgatgatctcAgtgggaggtc | acgatgatctcAgtgggaggtc | acgatgatctcGgtgggaggtc |
| Dm2096 | 71B2-71C1 | ggcagctgttGatcctgttga | ggcagctgttGatcctgttga | ggcagctgttAatcctgttga |
| Dm3672 | 71D1-71D2 | cgcccgtaaa[GCTACCATT]tcaatgtgTcccctgcaaa | cgcccgtaaa[GCTACCATT]tcaatgtgTcccctgcaaa | cgcccgtaaa[GCTACCATT deletion ]tcaatgtgTcccctgcaaa |
| Dm3239 | 71F1-71F2 | tatgaaattc[AATTTTTAATGTTTC]taggtcctaa | tatgaaattc[deletion]taggtcctaa | tatgaaattc[AATTTTTAATGTTTC]taggtcctaa |
| tgccagagcTgaactaaaagtgtgAgagatgtcaga | tgccagagcCgaactaaaagtgtgGgagatgtcaga | tgccagagcTgaactaaaagtgtgAgagatgtcaga | ||
| Dm3603 | 72A4-72B1 | aattgcaaccCaccacatcag | aattgcaaccTaccacatcag | aattgcaaccCaccacatcag |
| Dm1809 | 72C1-72D6 | ccttgaggcgAaggatctctg | ccttgaggcgCaggatctctg | ccttgaggcgAaggatctctg |
| Q1060 | 73A1-73A4 | Q1060 | Q1056 | iso3 |
| Dm3670 | 73E5-74A2 | ggctctagtaAagaagtgtag | ggctctagtaGagaagtgtag | ggctctagtaAagaagtgtag |
| Dm3626 | 74F4-75A2 | tacaaagtggAaaagcaaaag | tacaaagtggAaaagcaaaag | tacaaagtggGaaagcaaaag |
| Dm1766 | 76A2-76A4 | cgtgagcaatAccgataatgg | cgtgagcaatAccgataatgg | cgtgagcaatGccgataatgg |
| Dm2220 | 76B6-76B10 | ccattatcggTattgctcacg | ccattatcggTattgctcacg | ccattatcggCattgctcacg |
| Dm3089 | 76C3 | acataaatatg[ATGTATATGTAGTATATGTAAATA]tactacgtat | acataaatatg[ATGTATATGTAGTATATGTAAATA]tactacgtat | acataaatatg[ATGTATATGTAGTATATGTAAATA deletion]tactacgtat |
| Dm3369 | 77A1-77A2 | tgacagatttTcagtaaaaaaat | tgacagatttTcagtaaaaaaat | tgacagatttAcagtaaaaaaat |
| Dm3396 | 77E1-77E2 | atgcactcctGggagggagct | atgcactcctGggagggagct | atgcactcctAggagggagct |
| Q1056 | 83A7-83A8 | Q1056 | Q1059 | iso3 |
| Dm0143 | 84D3-84D4 | ataaatattaGgcgtagaaaa | ataaatattaAgcgtagaaaa | ataaatattaAgcgtagaaaa |
| agaaatgagtActttccagct | agaaatgagtTctttccagct | agaaatgagtTctttccagct | ||
| Dm0257 | 84E1-84E4 | cccgaacagc[T]6ccttaatcaa | cccgaacagc[T]7ccttaatcaa | cccgaacagc[T]7ccttaatcaa |
| Dm3212 | 85C11-85D9 | gcaaacaaccCggcatctggt | gcaaacaaccCggcatctggt | gcaaacaaccAggcatctggt |
| D1148 | 85E2-85E4 | ctccgctcccTttcaatgaat | ctccgctcccCttcaatgaat | ctccgctcccCttcaatgaat |
| Dm1607 | 85E2-85E4 | ttgaacttttTctttccaagt | ttgaacttttTctttccaagt | ttgaacttttCctttccaagt |
| Dm1568 | 86A5 | acaagaactcAtccacattga | acaagaactcCtccacattga | acaagaactcCtccacattga |
| Dm2216 | 86C1 | agccaccgagTtattcagtt | agccaccgagCtattcagtt | agccaccgagCtattcagtt |
| Dm2231 | 86C5-86C9 | tcattttattCtattaactgt | tcattttattGtattaactgt | tcattttattGtattaactgt |
| Dm3558 | 86C7-86C8 | taaaggatatTcacgatgagt | taaaggatatTcacgatgagt | taaaggatatCcacgatgagt |
| Dm1797 | 87A4-87A5 | gtgggagaaaaGggatccatgg | gtgggagaaaaAggatccatgg | gtgggagaaaaAggatccatgg |
| Dm3326 | 87F13-88A1 | tagtcagctg[deletion]gaaataggaa | tagtcagctg[GACATGAACTTATTCAGCAAC]gaaataggaa | tagtcagctg[GACATGAACTTATTCAGCAAC]gaaataggaa |
| cacttctattGacttTctaatgataa | cacttctattAacttCctaatgataa | cacttctattAacttCctaatgataa | ||
| taatgttgcaAaaatcgttcg | taatgttgcaGaaatcgttcg | taatgttgcaGaaatcgttcg | ||
| Dm3478 | 88A1 | tgctctccgtGcagcaggcga | tgctctccgtGcagcaggcga | tgctctccgtAcagcaggcga |
| Dm0337 | 89C2-89C5 | gattatgtggGtgtatttgga | gattatgtggGtgtatttgga | gattatgtggAtgtatttgga |
| atctcttcctgCtatattataa | atctcttcctgCtatattataa | atctcttcctgGtatattataa | ||
| Dm2709 | 89D2-89D4 | gagatgagctCctgtattcca | gagatgagctCctgtattcca | gagatgagctActgtattcca |
| Dm0117 | 89E3-89E4 | cgatttcaatTtacaaattag | cgatttcaatTtacaaattag | cgatttcaatCtacaaattag |
| acatctggatTtggtttcatc | acatctggatTtggtttcatc | acatctggatAtggtttcatc | ||
| Dm2494 | 89F4-90A2 | aagtggatttCcaactaatatctaatgctAagctacaata | aagtggatttGcaactaatatctaatgctTagctacaata | aagtggatttGcaactaatatctaatgctTagctacaata |
| atctatcgggAtactaatggaa | atctatcgggCtactaatggaa | atctatcgggCtactaatggaa | ||
| Dm3952 | 90D1-90E2 | cattgaattc[T]7gggaggccaa | cattgaattc[T]7gggaggccaa | cattgaattc[T]8gggaggccaa |
| Dm1621 | 90E3-90F2 | tcggaaactGaaagcagatg | tcggaaactCaaagcagatg | tcggaaactCaaagcagatg |
| gaacgccgaaGatgaccacc | gaacgccgaaTatgaccacc | gaacgccgaaTatgaccacc | ||
| Q1059 | 91A1-91A2 | Q1059 | Q1058 | iso3 |
| Dm0676 | 91B5-91B6 | tcagatagtgCtccacacata | tcagatagtgCtccacacata | tcagatagtgTtccacacata |
| Dm1708 | 91F11-92A1 | cttgaacagtTggatcttgca | cttgaacagtAggatcttgca | cttgaacagtAggatcttgca |
| tttgcctgccTtcgatgagaa | tttgcctgccCtcgatgagaa | tttgcctgccTtcgatgagaa | ||
| D1363 | 92B3-92B9 | aaattctttgAcgcaacaacc | aaattctttgGcgcaacaacc | aaattctttgGcgcaacaacc |
| Dm3618 | 92C1-92C4 | |||
| Dm3293 | 92D1-91?D2 | gtccattgtgTgaccctttgc | gtccattgtgCgaccctttgc | gtccattgtgCgaccctttgc |
| tgccactgagTactgagctgc | tgccactgagCactgagctgc | tgccactgagCactgagctgc | ||
| tccttggaatTagaatctttc | tccttggaatCagaatctttc | tccttggaatCagaatctttc | ||
| Dm0027 | 92D1-92D2 | tcatcaagcctAcgaataaactga | tcatcaagcctAcgaataaactga | tcatcaagcctCcgaataaactga |
| Dm1705 | 92D1-92D2 | aactttcataCaagCcggattttac | aactttcataAaagAcggattttac | aactttcataAaagAcggattttac |
| Dm1631 | 930 | aaaaagtgtaCtggcaaaaga | aaaaagtgtaCtggcaaaaga | aaaaagtgtaTtggcaaaaga |
| Dm3431 | 94A2 | cagcttcgcttcgGctgcgtctgcag | cagcttcgcttcgGctgcgtctgcag | cagcttcgcttcgTctgcgtctgcag |
| Dm2772 | 94C1-94C5 | agcctcatttCggcggtccac | agcctcatttTggcggtccac | agcctcatttTggcggtccac |
| Dm1601 | 94D2-94D3 | ggctaaagggCaaactctgct | ggctaaagggTaaactctgct | ggctaaagggTaaactctgct |
| Dm1603 | 94E6-94E12 | tagcaAtcgaac | tagcaGtcgaac | tagcaGtcgaac |
| Dm1981 | 94E9-94F2 | ggttactggtGctgatgatggtgCtgcgttggcg | ggttactggtGctgatgatggtgCtgcgttggcg | ggttactggtActgatgatggtgTtgcgttggcg |
| Dm1655 | 95B5-95B9 | atgtcgcccaTctgggaacct | atgtcgcccaTctgggaacct | atgtcgcccaCctgggaacct |
| Dm1592 | 95D1-95D6 | tgtccagacaCttcacttgct | tgtccagacaCttcacttgct | tgtccagacaTttcacttgct |
| Dm1649 | 96E11-96F3 | atagttatttCgattttacgt | atagttatttTgattttacgt | atagttatttCgattttacgt |
| aagaaatacaAatcatacaag | aagaaatacaCatcatacaag | aagaaatacaAatcatacaag | ||
| gactccaaacGtaattgt | gactccaaacTtaattgt | gactccaaacGtaattgt | ||
| Q1058 | Q1059 | Q1058 | iso3 | |
| Dm1657 | 97C1-97C3 | ctgcgcatggCcgcatcattt | ctgcgcatggCcgcatcattt | ctgcgcatggAcgcatcattt |
| tttccgccccGccatcctgct | tttccgccccAccatcctgct | tttccgccccAccatcctgct | ||
| Dm2515 | 100C1 | ccgaactccaCcagcagctga | ccgaactccaCcagcagctga | ccgaactccaTcagcagctga |