Find similar images to TI generated from a literature image

% Connect to database for querying the gene symbols
% Specify the MySQL parameters
nanosinfo.host='nanos';
nanosinfo.name='insitu';
nanosinfo.user='erwin';
nanosinfo.password='';
% Connect to the database with the Matlab Database toolbox
myconn=mysql_connect(nanosinfo)

% Create TI and display
litmesh = meshgen2('/Users/erwin/Desktop/manual2.tiff', ti, 1, 'verbose','dic','interactive');
figure; displaymesh(litmesh, ti.p_scale, ti.t)

% Assume to compare it to stage 11-12 embryos
% Retrieve all lateral TIs at stage 11-12
allStage11_idx = gmesh(myconn,ti,'%','lateral', 5, 0);

% Run similarity search just with TIs
esimilar3(ti, allStage11_idx, litmesh, 'distance', 'no_pdist', 'db', myconn)
% Run the same search to display the images, all images are located in /Volumes/nanos-images/insitu_image_storage/
esimilar3(ti, allStage11_idx, litmesh, 'distance', 'no_pdist', 'db', myconn, 'images', '/Volumes/nanos-images/insitu_image_storage/')