// Manual acquisition using Runnables
// Nico Stuurman, UCSF, June 2012.
// nico@cmp.ucsf.edu


import ij.gui.GenericDialog;


acq.clearRunnables();

runnable = new Runnable() {
   int count = 0;
   public void run() {
	   channels = acq.getChannels();
		channel = channels.get(count);
		// deal with useChannel_ flag
	   round = 0;
		while (!channel.useChannel && round < channels.size()) {
			count++;
			if (count == channels.size()) {
				count = 0;
				round++;
			}
			channel = channels.get(count);
		}
		// show message and wait for response
		GenericDialog dlg = new GenericDialog("Manual Acquisition", null);
      dlg.addMessage("Move filters for channel " + channel.config + " in place");
      dlg.showDialog();
      print("Move channel " + channel.config + " in place");
      ++count;
		if (count >= channels.size())
			count = 0;
   }
};

// Run the runnable on all frames and channels,
// but only when slize and position  are 0.
// -1 --> attach to all planes along given dimension

acq.attachRunnable(-1,0,-1,0,runnable); // f, p, c, s